Linux command
nf-core 命令
网络
复制后可按需替换文件名、目录或参数。
常用示例
List all available nf-core pipelines
nf-core pipelines list
Download a pipeline for offline use
nf-core pipelines download [pipeline-name]
Launch a pipeline interactively
nf-core pipelines launch [pipeline-name]
Show information about a pipeline
nf-core pipelines info [pipeline-name]
Create a new pipeline from template
nf-core pipelines create
Lint a pipeline for best practices
nf-core pipelines lint
List available pipeline schemas
nf-core pipelines schema lint
说明
nf-core is the command-line interface for the nf-core community, which curates a collection of high-quality bioinformatics pipelines built with Nextflow. The tool helps users find, download, launch, and develop pipelines following community best practices. The download command fetches pipelines along with their Singularity or Docker container images for use in offline or air-gapped environments. The launch command provides an interactive interface for setting pipeline parameters, generating a params file, and starting a run. For pipeline developers, create scaffolds a new pipeline from the nf-core template with CI, documentation, and testing built in. The lint command validates that a pipeline follows nf-core guidelines for code quality, documentation, and reproducibility.
参数
- --help
- Display help information.
- --version
- Show version.
- --verbose
- Increase output verbosity.
- --hide-progress
- Do not show progress bars.
- --log-file _FILE_
- Save log output to a file.
FAQ
What is the nf-core command used for?
nf-core is the command-line interface for the nf-core community, which curates a collection of high-quality bioinformatics pipelines built with Nextflow. The tool helps users find, download, launch, and develop pipelines following community best practices. The download command fetches pipelines along with their Singularity or Docker container images for use in offline or air-gapped environments. The launch command provides an interactive interface for setting pipeline parameters, generating a params file, and starting a run. For pipeline developers, create scaffolds a new pipeline from the nf-core template with CI, documentation, and testing built in. The lint command validates that a pipeline follows nf-core guidelines for code quality, documentation, and reproducibility.
How do I run a basic nf-core example?
Run `nf-core pipelines list` in a terminal, then adjust file names, paths, flags, or remote targets for your system.
What does --help do in nf-core?
Display help information.