Linux command
pymol 命令
文本
复制后可按需替换文件名、目录或参数。
常用示例
Launch PyMOL GUI
pymol
Open structure file
pymol [structure.pdb]
Run script
pymol [script.pml]
Command line mode
pymol -c [script.pml]
Render image
pymol -c -d "load [file.pdb]; ray; png [output.png]"
说明
PyMOL is a molecular visualization system for 3D structures of proteins, nucleic acids, and small molecules. It provides publication-quality graphics and extensive scripting capabilities.
参数
- -c
- Command line only (no GUI).
- -d _command_
- Execute command.
- -p
- Read commands from stdin.
- -q
- Quiet mode.
- -r _script_
- Run Python script.
- -e
- Exit after script.
FAQ
What is the pymol command used for?
PyMOL is a molecular visualization system for 3D structures of proteins, nucleic acids, and small molecules. It provides publication-quality graphics and extensive scripting capabilities.
How do I run a basic pymol example?
Run `pymol` in a terminal, then adjust file names, paths, flags, or remote targets for your system.
What does -c do in pymol?
Command line only (no GUI).